Fix the key parsing in the gamma actions.

.drone.yaml

@@ -5,6 +5,42 @@ name: default
 steps:
   - name: test
     image: clojure:temurin-11-lein-2.10.0-alpine
+    volumes:
+      - name: package_cache
+        path: /root/.m2/
     commands:
       - lein test
 
+  - name: build
+    image: clojure:temurin-11-lein-2.10.0-alpine
+    volumes:
+      - name: package_cache
+        path: /root/.m2/
+    commands:
+      - lein uberjar
+    when:
+      event: tag
+
+  - name: gitea_release
+    image: plugins/gitea-release
+    settings:
+      api_key:
+        from_secret: API_KEY
+      base_url:
+        from_secret: BASE_URL
+      files:
+        - target/uberjar/*.jar
+      checksum:
+        - md5
+        - sha1
+        - sha256
+        - sha512
+        - adler32
+        - crc32
+    when:
+      event: tag
+
+volumes:
+  - name: package_cache
+    temp: {}
+

.gitlab-ci.yml

@@ -0,0 +1,10 @@
+image: clojure:temurin-11-lein-2.10.0-alpine
+
+stages:
+  - test
+
+unit tests:
+  stage: test
+  script:
+    - lein test
+

CHANGELOG.md

@@ -0,0 +1,206 @@
+# Change Log
+
+All notable changes to this project will be documented in this file.
+
+The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
+and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
+
+## [Unreleased]
+
+## [0.7.2] - 2023-10-21
+
+### Changed
+- Update the CHANGELOG.
+- Update the version.
+- Update the README.
+- Update the CI/CD configuration to publish the artifacts to the release.
+- Update the diffs in the CHANGELOG.
+
+## [0.7.1] - 2023-10-20
+
+### Removed
+- Remove the test for FrequencyAnalyzer.
+- Remove the option for FrequencyAnalyzer.
+
+## [0.7.0] - 2023-10-20
+
+### Changed
+- Refactor to move actions to separated files.
+
+## [0.6.3] - 2023-10-14
+
+### Added
+- Add the IsNonsense interface for FrequencyAnalyzer.
+
+### Changed
+- Update the frequency analyzer.
+
+## [0.6.2] - 2023-10-14
+
+### Added
+- Add the analyzer options and their actions.
+- Add the available ciphers and analyzer for the help.
+- Add validations to check if a cipher or an analyzer is available.
+
+### Changed
+- Refactor to move options to a separated file.
+
+## [0.6.1] - 2023-10-13
+
+### Added
+- Add the function to make a frequency string from a map.
+
+### Fixed
+- Fix the bug that the default language symbols override the symbols.
+
+### Changed
+- Update the FrequencyAnalyzer to use the frequency string instead.
+
+## [0.6.0] - 2023-10-12
+
+### Fixed
+- Fix the typo "frequences" to frequencies.
+
+### Changed
+- Refactor the project structure.
+
+## [0.5.5] - 2023-10-09
+
+### Added
+- Add the Gitlab CI/CD configuration.
+
+## [0.5.4] - 2023-10-05
+
+### Added
+- Add the java source path.
+- Add the Caesar decrypted interface for Java.
+- Add a frequency analyzer as a stub.
+- Add the clojure wrapper for the frequency analizer and its test.
+
+## [0.5.3] - 2023-10-05
+
+### Added
+- Add the CHANGELOG.
+
+## [0.5.2] - 2023-10-02
+
+### Fixed
+- Fix checking for file existence only when the options are set.
+- Fix writing to a file only when the option is set.
+
+## [0.5.1] - 2023-09-28
+
+### Added
+- Add the output option to save into a file.
+- Add the file errors to prevent using an invalid file path.
+
+## [0.5.0] - 2023-09-22
+
+### Changed
+- Update symbol defaults, factories to have only lower alphabets.
+- Update the Caesar to be case-insensitive and skip unknown symbols.
+- Update Caesar Analyzers to be case-insensitive and testable.
+
+## [0.4.3] - 2023-09-21
+
+### Added
+- Add the language option for symbols.
+
+### Changed
+- Update the CLI to have separated actions and an option initializer.
+
+## [0.4.2] - 2023-09-18
+
+### Added
+- Add tests for the cipher-analyzers module.
+
+### Changed
+- Rename the cipher_analyzer module to cipher-analyzers.
+
+## [0.4.1] - 2023-09-17
+
+### Added
+- Add symbol factories for punctuation, space, defaults symbols.
+- Add the action-type to distinguish the actions.
+- Add the symbol option and its default.
+- Add the cracking option.
+
+### Changed
+- Rename the language_analyzer module to language-analyzer.
+- Update the nonsense for the is-nonsense? test.
+- Rename the symbol_frequences module to symbol-frequences.
+
+## [0.4.0] - 2023-09-15
+
+### Added
+- Add Chi-squared Statistic function to analyze texts.
+- Add the caesar-analyzers to get the plaintext from a ciphertext.
+
+## [0.3.5] - 2023-09-14
+
+### Added
+- Add the frequences of symbols as defaults.
+
+## [0.3.4] - 2023-09-13
+
+### Added
+- Add a simple language analyzers.
+
+## [0.3.3] - 2023-09-12
+
+### Added
+- Add an option to read a message from a file.
+
+## [0.3.2] - 2023-09-11
+
+### Added
+- Add the CI/CD configuration.
+
+## [0.3.1] - 2023-09-11
+
+### Added
+- Add factories for symbols.
+- Add tests for factories.
+
+## [0.3.0] - 2023-09-10
+
+### Added
+- Add a simple cli interface.
+
+## [0.2.0] - 2023-09-09
+
+### Added
+- Add a implementation of Caesar cipher.
+
+## [0.1.0] - 2023-09-09
+
+### Added
+- Project initialization.
+
+[Unreleased]: https://gitlab.com/KKlochko/cipher-analytical-machine/-/compare/0.7.2...main?from_project_id=50218541&straight=false
+[0.7.2]: https://gitlab.com/KKlochko/cipher-analytical-machine/-/compare/0.7.1...0.7.2?from_project_id=50218541&straight=false
+[0.7.1]: https://gitlab.com/KKlochko/cipher-analytical-machine/-/compare/0.7.0...0.7.1?from_project_id=50218541&straight=false
+[0.7.0]: https://gitlab.com/KKlochko/cipher-analytical-machine/-/compare/0.6.3...0.7.0?from_project_id=50218541&straight=false
+[0.6.3]: https://gitlab.com/KKlochko/cipher-analytical-machine/-/compare/0.6.2...0.6.3?from_project_id=50218541&straight=false
+[0.6.2]: https://gitlab.com/KKlochko/cipher-analytical-machine/-/compare/0.6.1...0.6.2?from_project_id=50218541&straight=false
+[0.6.1]: https://gitlab.com/KKlochko/cipher-analytical-machine/-/compare/0.6.0...0.6.1?from_project_id=50218541&straight=false
+[0.6.0]: https://gitlab.com/KKlochko/cipher-analytical-machine/-/compare/0.5.5...0.6.0?from_project_id=50218541&straight=false
+[0.5.5]: https://gitlab.com/KKlochko/cipher-analytical-machine/-/compare/0.5.4...0.5.5?from_project_id=50218541&straight=false
+[0.5.4]: https://gitlab.com/KKlochko/cipher-analytical-machine/-/compare/0.5.3...0.5.4?from_project_id=50218541&straight=false
+[0.5.3]: https://gitlab.com/KKlochko/cipher-analytical-machine/-/compare/0.5.2...0.5.3?from_project_id=50218541&straight=false
+[0.5.2]: https://gitlab.com/KKlochko/cipher-analytical-machine/-/compare/0.5.1...0.5.2?from_project_id=50218541&straight=false
+[0.5.1]: https://gitlab.com/KKlochko/cipher-analytical-machine/-/compare/0.5.0...0.5.1?from_project_id=50218541&straight=false
+[0.5.0]: https://gitlab.com/KKlochko/cipher-analytical-machine/-/compare/0.4.3...0.5.0?from_project_id=50218541&straight=false
+[0.4.3]: https://gitlab.com/KKlochko/cipher-analytical-machine/-/compare/0.4.2...0.4.3?from_project_id=50218541&straight=false
+[0.4.2]: https://gitlab.com/KKlochko/cipher-analytical-machine/-/compare/0.4.1...0.4.2?from_project_id=50218541&straight=false
+[0.4.1]: https://gitlab.com/KKlochko/cipher-analytical-machine/-/compare/0.4.0...0.4.1?from_project_id=50218541&straight=false
+[0.4.0]: https://gitlab.com/KKlochko/cipher-analytical-machine/-/compare/0.3.5...0.4.0?from_project_id=50218541&straight=false
+[0.3.5]: https://gitlab.com/KKlochko/cipher-analytical-machine/-/compare/0.3.4...0.3.5?from_project_id=50218541&straight=false
+[0.3.4]: https://gitlab.com/KKlochko/cipher-analytical-machine/-/compare/0.3.3...0.3.4?from_project_id=50218541&straight=false
+[0.3.3]: https://gitlab.com/KKlochko/cipher-analytical-machine/-/compare/0.3.2...0.3.3?from_project_id=50218541&straight=false
+[0.3.2]: https://gitlab.com/KKlochko/cipher-analytical-machine/-/compare/0.3.1...0.3.2?from_project_id=50218541&straight=false
+[0.3.1]: https://gitlab.com/KKlochko/cipher-analytical-machine/-/compare/0.3.0...0.3.1?from_project_id=50218541&straight=false
+[0.3.0]: https://gitlab.com/KKlochko/cipher-analytical-machine/-/compare/0.2.0...0.3.0?from_project_id=50218541&straight=false
+[0.2.0]: https://gitlab.com/KKlochko/cipher-analytical-machine/-/compare/0.1.0...0.2.0?from_project_id=50218541&straight=false
+[0.1.0]: https://gitlab.com/KKlochko/cipher-analytical-machine/-/commit/a7a715b94276fc8f46fb6a44139636d27b551599
+

README.md

@@ -11,10 +11,12 @@ Download from https://gitlab.com/KKlochko/cipher-analytical-machine.
 You need install java, before run the application.
 Run the application with a command:
 
-    $ java -jar cipher-analytical-machine-0.1.0-standalone.jar [args]
+    $ java -jar cipher-analytical-machine-VERSION-standalone.jar [args]
+    $ java -jar cipher-analytical-machine-0.7.2-standalone.jar [args]
 
 ## License
 
 Copyright © 2023 Kostiantyn Klochko
 
 Under the GNU Lesser General Public License v3.0 or later.
+

project.clj

@@ -1,4 +1,4 @@
-(defproject cipher-analytical-machine "0.1.0-SNAPSHOT"
+(defproject cipher-analytical-machine "0.7.2"
   :description "A program helps to learn how ciphers works."
   :url "https://gitlab.com/KKlochko/cipher-analytical-machine"
   :license {:name "LGPL"
@@ -6,8 +6,10 @@
   :dependencies [[org.clojure/clojure "1.11.1"]
                  [org.clojure/tools.cli "1.0.219"]
                  [org.apache.tika/tika-core "1.28.5"]
-                 [org.apache.tika/tika-langdetect "1.28.5"]]
+                 [org.apache.tika/tika-langdetect "1.28.5"]
+                 [cheshire "5.12.0"]]
   :main ^:skip-aot cipher-analytical-machine.core
+  :java-source-paths ["src/main/java"]
   :target-path "target/%s"
   :profiles {:uberjar {:aot :all
                        :jvm-opts ["-Dclojure.compiler.direct-linking=true"]}})

src/cipher_analytical_machine/analyzers/analyzers.clj

@@ -0,0 +1,57 @@
+(ns cipher-analytical-machine.analyzers.analyzers
+  (:require [clojure.string :as cs])
+  (:gen-class))
+
+(defn count-characters
+  "Count the letters and return map."
+  [text]
+  (reduce
+   (fn [acc val]
+     (assoc acc val
+            (inc (get acc val 0))))
+   {} text))
+
+(defn chi-squared-letter-statistic
+  "To calculate the frequency distribution of a letter."
+  [letter-count letter-frequence length-text]
+  (let [letter-frequence (* length-text letter-frequence)]
+    (/ (Math/pow
+        (- letter-count letter-frequence) 2)
+       letter-frequence)))
+
+(defn chi-squared-statistic
+  "To calculate the frequency distribution of a language. More detail about the algorithm here: http://practicalcryptography.com/cryptanalysis/text-characterisation/chi-squared-statistic/"
+  [text letter-frequencies]
+  (let [length-text (count text)
+        letter-counts (count-characters (cs/lower-case text))]
+    ;letter-counts
+    (reduce
+     (fn [acc [char count]]
+       (+ acc
+          (if (contains? letter-frequencies char)
+            (chi-squared-letter-statistic count
+                                          (get letter-frequencies char)
+                                          length-text)
+            0)))
+            0
+            letter-counts)))
+
+(defn sort-map-by-count
+  "Return a list of pairs from a map of pairs where a pair is a character and its count. The order is descending."
+  [count-map]
+  (->> count-map
+       (reduce (fn [acc [char count]] (conj acc [char count])) [])
+       (sort-by #(- (second %)))))
+
+(defn table-to-string
+  "Return the string from a frequency table."
+  [table]
+  (->> (map first table)
+       (apply str)))
+
+(defn symbol-frequency-table
+  "Return a table where pairs is a symbol from a cipher text and its value which is a symbol from frequency table."
+  [cipher-table frequency-table]
+  (zipmap (table-to-string (sort-map-by-count cipher-table))
+          (table-to-string (sort-map-by-count frequency-table))))
+

src/cipher_analytical_machine/analyzers/caesar.clj

@@ -0,0 +1,64 @@
+(ns cipher-analytical-machine.analyzers.caesar
+  (:require [cipher-analytical-machine.ciphers.caesar :as caesar]
+            [clojure.string :as cs]
+            [cipher-analytical-machine.analyzers.language :as language]
+            [cipher-analytical-machine.analyzers.analyzers :as ca])
+  (:import [cipher_analytical_machine.ciphers.caesar Decrypted]
+           [cipher_analytical_machine.analyzers.caesar IsNonsense]
+           [cipher_analytical_machine.analyzers.caesar FrequencyAnalyzer])
+  (:gen-class))
+
+(defn get-all-texts
+  "Return a list of pairs which have a key and a second posible plaintext."
+  [ciphertext symbols]
+  (let [keys (range (count symbols))]
+    (reduce
+     (fn [acc key]
+       (conj acc [key (caesar/decrypt-message ciphertext key symbols)]))
+     '() keys)))
+
+(defn get-all-scores
+  "For pairs (key, plaintext) finds scores and return list of pairs [key, score]."
+  [letter-frequencies pairs]
+  (map (fn [[key text]]
+         [key (ca/chi-squared-statistic text letter-frequencies)])
+       pairs))
+
+(defn get-min-score-pair
+  "For pairs (key, plaintext) finds scores and return list of pairs [key, score]."
+  [pairs]
+  (reduce
+   (fn [[key value] [new-key new-value]]
+     (if (> value new-value) [new-key new-value]
+         [key value]))
+   [0 Double/MAX_VALUE]
+   pairs))
+
+(defn get-key
+  "To find the key with frequencies of letters."
+  [ciphertext symbols letter-frequencies]
+  (->> (get-all-texts ciphertext symbols)
+       (get-all-scores letter-frequencies)
+       (get-min-score-pair)
+       (first)))
+
+(defn get-plaintext
+  "Return the plaintext from a ciphertext. The function is case-insensitive."
+  [ciphertext symbols letter-frequencies]
+  (let [ciphertext (cs/lower-case ciphertext)]
+    (caesar/decrypt-message ciphertext
+                            (get-key ciphertext symbols letter-frequencies)
+                            symbols)))
+
+(defn frequency-analizer-get-plaintext
+  "Return the plaintext from a ciphertext using simple analizer. The function is case-insensitive."
+  [ciphertext symbols letter-frequencies-string language-code]
+  (let [decrypt (reify Decrypted
+                  (decrypt [this message key symbols]
+                    (caesar/decrypt-message message key symbols)))
+        is-nonsense (reify IsNonsense
+                  (isNonsense [this message]
+                    (language/is-nonsense? message language-code)))]
+    (-> (new FrequencyAnalyzer ciphertext symbols letter-frequencies-string decrypt is-nonsense)
+        .crack)))
+

src/cipher_analytical_machine/analyzers/language.clj

@@ -1,4 +1,4 @@
-(ns cipher-analytical-machine.language_analyzer
+(ns cipher-analytical-machine.analyzers.language
   (:import [org.apache.tika.language LanguageIdentifier])
   (:gen-class))
 

src/cipher_analytical_machine/ciphers/caesar.clj

@@ -1,4 +1,4 @@
-(ns cipher-analytical-machine.caesar
+(ns cipher-analytical-machine.ciphers.caesar
   (:require [clojure.string :as cs])
   (:gen-class))
 
@@ -14,21 +14,28 @@
        (+ key)
        (mod max-index)))
 
+(defn encrypt-or-skip
+  "If symbols do not have a character, then it will be skipped."
+  [index character key symbols max-index]
+  (if (nil? index) character
+      (get symbols
+           (encrypt-index index key max-index))))
+
 (defn encrypt-char
   "Calculates new index of a character. Uses a char from symbols, the key and max-index (exclusive)."
   [char key symbols max-index]
-  (get symbols
-       (-> char
-           (calculate-char-index symbols)
-           (encrypt-index key max-index))))
+  (-> char
+      (calculate-char-index symbols)
+      (encrypt-or-skip char key symbols max-index)))
 
 (defn encrypt-message
-  "Encrypt a message using the Caesar cipher."
+  "Encrypt a message using the Caesar cipher. The function is case-insensitive."
   [message key symbols]
   (let [max-index (count symbols)]
-    (cs/join
-     (map (fn [char] (encrypt-char char key symbols max-index))
-          message))))
+    (->> message
+         (cs/lower-case)
+         (map (fn [char] (encrypt-char char key symbols max-index)))
+         (cs/join))))
 
 (defn decrypt-message
   "Decrypt the ciphtext using the Caesar cipher."

src/cipher_analytical_machine/ciphers/gamma.clj

@@ -0,0 +1,78 @@
+(ns cipher-analytical-machine.ciphers.gamma
+  (:require
+   [clojure.set :as set]
+   [clojure.string :as cs]
+   [cipher-analytical-machine.ciphers.simple-substitution :as ss])
+  (:gen-class))
+
+(defn add-mod
+  [f s module]
+  (-> (+ f s)
+      (mod module)))
+
+(defn generate-seq
+  "Generate a lazy sequence for a key (a b c)."
+  [a b c module]
+  ((fn build-seq [a b c]
+     (lazy-seq (cons a (build-seq b c (add-mod a c module))))) a b c))
+
+(defn generate-gamma-seq
+  "Generate the gamma seq from a sequence."
+  [acc seq module]
+  (if (= (second seq) nil) acc
+    (generate-gamma-seq
+     (conj acc (add-mod (first seq) (second seq) module))
+     (rest seq)
+     module)))
+
+(defn generate-gamma
+  "Generate the gamma from a key (a b c)."
+  [a b c module size]
+  (generate-gamma-seq []
+                      (->> (generate-seq a b c module)
+                           (take (inc size)))
+                      module))
+
+(defn encrypt-array
+  "Encrypt an array using the gamma cipher. The function is case-insensitive. The key is an array of three elements [a b c]. The array contains integer in range [0, module)."
+  [key module array]
+  (let [size (count array)
+        gamma (->> (apply conj [key module size])
+                   (apply generate-gamma))]
+    (->> gamma
+         (map vector array)
+         (map (fn [[a g]] (add-mod a g module))))))
+
+(defn encrypt-message
+  "Encrypt a message using the gamma cipher. The function is case-insensitive. The key is an array of three elements [a b c]. The array contains integer in range [0, module)."
+  [key symbols message]
+  (let [module (count symbols)
+        table (ss/generate-sorted-substitution-table symbols)]
+    (->> message
+         (ss/decrypt-by-table (set/map-invert table))
+         (encrypt-array key module)
+         (ss/decrypt-by-table table)
+         (cs/join))))
+
+(defn decrypt-array
+  "Decrypt an array using the gamma cipher. The function is case-insensitive. The key is an array of three elements [a b c]. The array contains integer in range [0, module)."
+  [key module array]
+  (let [size (count array)
+        gamma (->> (apply conj [key module size])
+                   (apply generate-gamma))]
+    (->> gamma
+         (map -)
+         (map vector array)
+         (map (fn [[a g]] (add-mod a g module))))))
+
+(defn decrypt-message
+  "Decrypt a message using the gamma cipher. The function is case-insensitive. The key is an array of three elements [a b c]. The array contains integer in range [0, module)."
+  [key symbols message]
+  (let [module (count symbols)
+        table (ss/generate-sorted-substitution-table symbols)]
+    (->> message
+         (ss/decrypt-by-table (set/map-invert table))
+         (decrypt-array key module)
+         (ss/decrypt-by-table table)
+         (cs/join))))
+

src/cipher_analytical_machine/ciphers/simple_substitution.clj

@@ -0,0 +1,74 @@
+(ns cipher-analytical-machine.ciphers.simple-substitution
+  (:require [clojure.string :as cs]
+            [cipher-analytical-machine.ciphers.caesar :as caesar])
+  (:gen-class))
+
+(defn shuffled-numbers
+  "Generate the shuffled order for integer list."
+  [size]
+  (-> size
+      (take (range))
+      (shuffle)))
+
+(defn generate-substitution-table
+  "Generate the map (char, int) for the substittion."
+  [symbols]
+  (->> (count symbols)
+       (shuffled-numbers)
+       (zipmap symbols)))
+
+(defn generate-sorted-substitution-table
+  "Generate the map (char, int) for the substittion. BUT a value is the index of a symbol (from 0)."
+  [symbols]
+  (-> (count symbols)
+      (take (range))
+      (zipmap symbols)))
+
+(defn find-value-in-table
+  "It uses the substitution table to find the value of a char or a number."
+  [char substitution-table]
+  (get substitution-table char))
+
+(defn decrypt-by-table
+  "Decrypt a message by the substitution-table"
+  [substitution-table message]
+  (map (fn [char] (find-value-in-table char substitution-table)) message))
+
+(defn encrypt-message
+  "Encrypt a message using the simple substitution cipher. The function is case-insensitive. If a symbol isn't in the symbols list, then it will be removed."
+  [message substitution-table]
+  (->> message
+       (decrypt-by-table substitution-table)
+       (remove nil?)
+       (cs/join \,)))
+
+(defn encrypt-message-with-caesar
+  "Encrypt a message using the simple substitution cipher and the Caesar cipher. The function is case-insensitive. If a symbol isn't in the symbols list, then it will be removed."
+  [message key substitution-table symbols]
+  (-> message
+      (caesar/encrypt-message key symbols)
+      (encrypt-message substitution-table)))
+
+(defn decrypt-message-by-symbol-table
+  "Decrypt a message using the simple substitution cipher. The function is case-insensitive. The substitution-table must be (symbols, symbols)."
+  [substitution-table message]
+  (->> message
+       (decrypt-by-table substitution-table)
+       (remove nil?)
+       (cs/join)))
+
+(defn decrypt-message
+  "Decrypt a message using the simple substitution cipher. The function is case-insensitive. The substitution-table must be (int, symbols)."
+  [message substitution-table]
+  (let [message (cs/split message #",")]
+    (->> message
+         (map #(Integer/parseInt %))
+         (decrypt-message-by-symbol-table substitution-table))))
+
+(defn decrypt-message-with-caesar
+  "Decrypt a message using the simple substitution cipher and the Caesar cipher. The function is case-insensitive."
+  [message key substitution-table symbols]
+  (-> message
+      (decrypt-message substitution-table)
+      (caesar/decrypt-message key symbols)))
+

src/cipher_analytical_machine/cli.clj

@@ -1,98 +0,0 @@
-(ns cipher-analytical-machine.cli
-  (:require
-   [cipher-analytical-machine.file :as file]
-   [cipher-analytical-machine.caesar :as caesar]
-   [clojure.string :as cs]
-   [clojure.tools.cli :refer [parse-opts]])
-  (:gen-class))
-
-(def cipher-options
-  #{"Caesar"})
-
-(def cli-options
-  [["-m" "--message MESSAGE" "The message will be encrypted or decrypted."]
-   ["-M" "--message-file MESSAGE-FILE" "The file contains the message that will be encrypted or decrypted."]
-   ["-k" "--key KEY" "The key will be used to encrypt or decrypt."]
-   ["-c" "--cipher CIPHER" "The cipher will be used to encrypt or decrypt a message."
-    :default "Caesar"]
-   ["-e" "--encrypt" "Encrypt the message."]
-   ["-d" "--decrypt" "Decrypt the message."]
-   ["-h" "--help"]])
-
-(defn usage [options-summary]
-  (->> ["This is cipher-analytical-machine. It can help you to learn how ciphers works."
-        ""
-        "Usage: cipher-analytical-machine [options]"
-        ""
-        "Options:"
-        options-summary
-        ""]
-       (cs/join \newline)))
-
-(defn error-msg [errors]
-  (str "The following errors occurred while parsing your command:\n\n"
-       (cs/join \newline errors)))
-
-(defn map-has-keys?
-  "Return true if all keys in the map."
-  [map keys]
-  (every? #(contains? map %) keys))
-
-(defn validate-args
-  "Validate command line arguments. Either return a map indicating the program
-  should exit (with an error message, and optional ok status), or a map
-  indicating the action the program should take and the options provided."
-  [args]
-  (let [{:keys [options arguments errors summary]} (parse-opts args cli-options)]
-    (cond
-      (:help options)
-      {:exit-message (usage summary) :ok? true}
-
-      errors
-      {:exit-message (error-msg errors)}
-
-      (map-has-keys? options [:encrypt, :decrypt])
-      {:exit-message (error-msg ["You can't use enctypt and decrypt mode at the same time!!!"])}
-
-      (map-has-keys? options [:message, :message-file])
-      {:exit-message (error-msg ["You can't use message and message-file options at the same time!!!"])}
-
-      (and (map-has-keys? options [:cipher, :key])
-           (or (contains? options :message)
-               (contains? options :message-file))
-           (or (contains? options :encrypt)
-               (contains? options :decrypt)))
-      {:options options :arguments arguments}
-
-      :else
-      {:exit-message (usage summary)})))
-
-(defn exit
-  [exit-message status]
-  (println exit-message)
-  (System/exit (if status 0 1)))
-
-(defn get-message
-  "Return the message"
-  [options arguments]
-  (cond
-    (contains? options :message)
-    (:message options)
-
-    (contains? options :message-file)
-    (file/read-file (:message-file options))))
-
-(defn actions
-  [options arguments]
-  (println (str options arguments))
-  (let [message (get-message options arguments)
-        key (Integer/parseInt (:key options))
-        symbols "abc"]
-    (println
-     (cond
-       (contains? options :encrypt)
-       (caesar/encrypt-message message key symbols)
-
-       (contains? options :decrypt)
-       (caesar/decrypt-message message key symbols)))))
-

src/cipher_analytical_machine/cli/actions/cracking.clj

@@ -0,0 +1,26 @@
+(ns cipher-analytical-machine.cli.actions.cracking
+  (:require
+   [cipher-analytical-machine.analyzers.caesar :as caesar-analyzers]
+   [cipher-analytical-machine.symbols.frequencies :as symbol-frequencies])
+  (:gen-class))
+
+(defn cracking-caesar
+  [options arguments]
+  (let [analyzer (:analyzer options)
+        message (:message options)
+        symbols (:symbols options)
+        frequencies symbol-frequencies/english-letter-frequencies]
+    (cond
+      (= analyzer "Chi^2")
+      (caesar-analyzers/get-plaintext message symbols frequencies)
+
+      :else
+      (caesar-analyzers/get-plaintext message symbols frequencies))))
+
+(defn cracking-actions
+  [options arguments action-type]
+  (let [cipher (:cipher options)]
+    (cond
+      (= cipher "Caesar")
+      (cracking-caesar options arguments))))
+

src/cipher_analytical_machine/cli/actions/cryptography.clj

@@ -0,0 +1,69 @@
+(ns cipher-analytical-machine.cli.actions.cryptography
+  (:require
+   [clojure.string :as cs]
+   [cipher-analytical-machine.ciphers.caesar :as caesar]
+   [cipher-analytical-machine.ciphers.simple-substitution :as ss]
+   [cipher-analytical-machine.ciphers.gamma :as gamma]
+   [cipher-analytical-machine.parsers.parsers :as ps]
+   [cipher-analytical-machine.parsers.simple-substitution :as pss])
+  (:gen-class))
+
+(defn caesar-actions
+  [options arguments action-type]
+  (let [message (:message options)
+        key (Integer/parseInt (:key options))
+        symbols (:symbols options)]
+    (cond
+      (= action-type :encrypt)
+      (caesar/encrypt-message message key symbols)
+
+      (= action-type :decrypt)
+      (caesar/decrypt-message message key symbols))))
+
+(defn simple-substitution-with-caesar-actions
+  [options arguments action-type]
+  (let [message (:message options)
+        key (:key options)
+        symbols (:symbols options)]
+    (cond
+      (= action-type :encrypt)
+      (let [data (pss/generate-table-or-decode-json key symbols)
+            key (ps/parse-unsigned-int (get data "key"))
+            substitution-table (get data "table")]
+        (println (pss/encode-key-and-substitution-table-to-json key substitution-table))
+        (ss/encrypt-message-with-caesar message key substitution-table symbols))
+
+      (= action-type :decrypt)
+      (let [data (-> (pss/decode-key-and-substitution-table-from-json key)
+                     (pss/invert-table-in-map))
+            key (get data "key")
+            substitution-table (get data "table")]
+        (ss/decrypt-message-with-caesar message key substitution-table symbols)))))
+
+(defn gamma-actions
+  [options arguments action-type]
+  (let [message (:message options)
+        key (->> (cs/split (:key options) #",")
+                 (map #(Integer/parseInt %))
+                 (into []))
+        symbols (:symbols options)]
+    (cond
+      (= action-type :encrypt)
+      (gamma/encrypt-message key symbols message)
+
+      (= action-type :decrypt)
+      (gamma/decrypt-message key symbols message))))
+
+(defn cryptography-actions
+  [options arguments action-type]
+  (let [cipher (:cipher options)]
+    (cond
+      (= cipher "Caesar")
+      (caesar-actions options arguments action-type)
+
+      (= cipher "Simple substitution and Caesar")
+      (simple-substitution-with-caesar-actions options arguments action-type)
+
+      (= cipher "Gamma")
+      (gamma-actions options arguments action-type))))
+

src/cipher_analytical_machine/cli/cli.clj

@@ -0,0 +1,169 @@
+(ns cipher-analytical-machine.cli.cli
+  (:require
+   [cipher-analytical-machine.cli.file :as file]
+   [cipher-analytical-machine.symbols.factories :as sf]
+   [cipher-analytical-machine.cli.options :as options]
+   [clojure.string :as cs]
+   [cipher-analytical-machine.cli.actions.cryptography :as cryptography]
+   [cipher-analytical-machine.cli.actions.cracking :as cracking]
+   [clojure.tools.cli :refer [parse-opts]])
+  (:gen-class))
+
+(defn usage [options-summary]
+  (->> ["This is cipher-analytical-machine. It can help you to learn how ciphers works."
+        ""
+        "Usage: cipher-analytical-machine [options]"
+        ""
+        "Options:"
+        options-summary
+        ""
+        "Available values"
+        ""
+        (options/get-available-cipher-options-as-string)
+        ""
+        (options/get-available-analyzers-options-as-string)
+        ""]
+       (cs/join \newline)))
+
+(defn error-msg [errors]
+  (str "The following errors occurred while parsing your command:\n\n"
+       (cs/join \newline errors)))
+
+(defn map-has-keys?
+  "Return true if all keys in the map."
+  [map keys]
+  (every? #(contains? map %) keys))
+
+(defn validate-args
+  "Validate command line arguments. Either return a map indicating the program
+  should exit (with an error message, and optional ok status), or a map
+  indicating the action the program should take and the options provided."
+  [args]
+  (let [{:keys [options arguments errors summary]} (parse-opts args options/cli-options)]
+    (cond
+      (:help options)
+      {:exit-message (usage summary) :ok? true}
+
+      errors
+      {:exit-message (error-msg errors)}
+
+      (map-has-keys? options [:encrypt, :decrypt])
+      {:exit-message (error-msg ["You can't use enctypt and decrypt mode at the same time!!!"])}
+
+      (map-has-keys? options [:message, :message-file])
+      {:exit-message (error-msg ["You can't use message and message-file options at the same time!!!"])}
+
+      (and (contains? options :message-file)
+           (file/is-file-not-exists? (:message-file options)))
+      {:exit-message (error-msg ["Please, check the path to the message file!!!"])}
+
+      (and (contains? options :output-file)
+           (file/is-file-exists? (:output-file options)))
+      {:exit-message (error-msg ["Please, choose another file!!! Overwriting was prevented!!!"])}
+
+      (false? (contains? options/cipher-options (:cipher options)))
+      {:exit-message (error-msg ["Please, choose an available cipher!!!\n"
+                                 (options/get-available-cipher-options-as-string)])}
+
+      (and (map-has-keys? options [:cipher, :cracking, :analyzer])
+           (false? (contains?
+             (get options/analyzers-options (:cipher options)) (:analyzer options))))
+      {:exit-message (error-msg ["Please, choose an available analyzer!!!\n"
+                                 (options/get-available-analyzers-options-as-string)])}
+
+      (and (map-has-keys? options [:cipher, :key])
+           (or (contains? options :message)
+               (contains? options :message-file))
+           (or (contains? options :encrypt)
+               (contains? options :decrypt)))
+      (cond
+        (contains? options :encrypt)
+        {:options options :arguments arguments :action-type :encrypt}
+
+        (contains? options :decrypt)
+        {:options options :arguments arguments :action-type :decrypt})
+
+      (and (map-has-keys? options [:cipher, :cracking])
+           (or (contains? options :message)
+               (contains? options :message-file)))
+      {:options options :arguments arguments :action-type :cracking}
+
+      :else
+      {:exit-message (usage summary)})))
+
+(defn exit
+  [exit-message status]
+  (println exit-message)
+  (System/exit (if status 0 1)))
+
+(defn get-or-load-option
+  "Return the option value or load the value from a file."
+  [options arguments option]
+  (let [file-option (keyword (str (name option) "-file"))]
+    (cond
+      (contains? options option)
+      (option options)
+
+      (contains? options file-option)
+      (file/read-file (file-option options)))))
+
+(defn set-option
+  "Set a option in the option map."
+  [options option value]
+  (-> options
+      (assoc option value)))
+
+(defn set-symbols
+  "Set defaults symbols for a language."
+  [options]
+  (if (contains? options :language)
+    (set-option options :symbols
+                (sf/default-symbol-factory (:language options)))
+    options))
+
+(defn load-and-set-option
+  "Load the option and set it."
+  [options option]
+  (->> (get-or-load-option options nil option)
+       (set-option options option)))
+
+(defn load-all-options
+  "Load all options."
+  [options]
+  (-> options
+      (set-symbols)
+      (load-and-set-option :message)))
+
+(defn save-output
+  "Save the output to a file"
+  [output options]
+  (let [file-path (:output-file options)]
+    (file/write-file file-path output)))
+
+(defn show-and-save-output
+  "Print and save the output to a file if needed"
+  [output options]
+  (when (contains? options :output-file)
+    (save-output output options))
+  (println output))
+
+(defn actions
+  [options arguments action-type]
+  (let [options (load-all-options options)]
+    (->
+     (cond
+       (contains? #{:encrypt :decrypt} action-type)
+       (cryptography/cryptography-actions options arguments action-type)
+
+       (= action-type :cracking)
+       (cracking/cracking-actions options arguments action-type))
+
+     (show-and-save-output options))))
+
+(defn cli-main
+  [args]
+  (let [{:keys [options arguments action-type exit-message ok?]} (validate-args args)]
+    (if exit-message
+      (exit exit-message ok?)
+      (actions options arguments action-type))))
+

src/cipher_analytical_machine/cli/file.clj

@@ -1,4 +1,4 @@
-(ns cipher-analytical-machine.file
+(ns cipher-analytical-machine.cli.file
   (:require [clojure.java.io :as io])
   (:gen-class))
 
@@ -16,3 +16,6 @@
 (defn read-file [file-path]
   (slurp file-path))
 
+(defn write-file [file-path content]
+  (spit file-path content))
+

src/cipher_analytical_machine/cli/options.clj

@@ -0,0 +1,64 @@
+(ns cipher-analytical-machine.cli.options
+  (:require
+   [cipher-analytical-machine.symbols.factories :as sf]
+   [clojure.string :as cs])
+  (:gen-class))
+
+(defn option-values-as-row
+  "Return the formatted string of values for an option."
+  [option values]
+  (str option ": " (cs/join ", " values)))
+
+(defn option-values-as-list
+  "Return the formatted string of values for an option as a multiline list."
+  [option values]
+  (str option ": \n - " (cs/join "\n - " values)))
+
+(defn map-of-option-value-as-list
+  "Return the formatted string of values for an option as a multiline list.
+   The values are a map of pairs (suboption and its options)."
+  [option values]
+  (let [values (map #(apply option-values-as-row %) values)]
+    (option-values-as-list option values)))
+
+(def cipher-options
+  #{"Caesar" "Simple substitution and Caesar"})
+
+(def default-cipher "Caesar")
+
+(defn get-available-cipher-options-as-string
+  "Return the formatted string of analyzers options."
+  []
+  (option-values-as-row "Ciphers" cipher-options))
+
+(def analyzers-options
+  {"Caesar" #{"Chi^2"}})
+
+(defn get-available-analyzers-options-as-string
+  "Return the formatted string of analyzers options."
+  []
+  (map-of-option-value-as-list "Analyzers" analyzers-options))
+
+(def language-options
+  #{"en", "uk"})
+
+(def default-symbols
+  (sf/default-symbol-factory "en"))
+
+(def cli-options
+  [["-m" "--message MESSAGE" "The message will be encrypted or decrypted."]
+   ["-M" "--message-file MESSAGE-FILE" "The file contains the message that will be encrypted or decrypted."]
+   ["-k" "--key KEY" "The key will be used to encrypt or decrypt."]
+   ["-c" "--cipher CIPHER" "The cipher will be used to encrypt or decrypt a message."
+    :default default-cipher]
+   ["-e" "--encrypt" "Encrypt the message."]
+   ["-d" "--decrypt" "Decrypt the message."]
+   ["-s" "--symbols SYMBOLS" "The string will be used as a set of symbols for a cipher."
+    :default default-symbols]
+   ["-l" "--language CODE" "The string will be used to set a default symbols for a cipher."
+    :validate [#(contains? language-options %) "Must be a code from the list: en, uk!!!"]]
+   ["-C" "--cracking" "Cracking the encrypted message."]
+   ["-a" "--analyzer ANALYZER" "The way of cracking."]
+   ["-O" "--output-file OUTPUT-FILE" "Save the program output to a file."]
+   ["-h" "--help"]])
+

src/cipher_analytical_machine/core.clj

@@ -1,12 +1,9 @@
 (ns cipher-analytical-machine.core
   (:require
-   [cipher-analytical-machine.cli :as cli])
+   [cipher-analytical-machine.cli.cli :as cli])
   (:gen-class))
 
 (defn -main
   [& args]
-  (let [{:keys [options arguments exit-message ok?]} (cli/validate-args args)]
-    (if exit-message
-      (cli/exit exit-message ok?)
-      (cli/actions options arguments))))
+  (cli/cli-main args))
 

src/cipher_analytical_machine/parsers/parsers.clj

@@ -0,0 +1,23 @@
+(ns cipher-analytical-machine.parsers.parsers
+  (:require [cheshire.core :as cc])
+  (:gen-class))
+
+(defn unsigned-int?
+  "Return true if the string is an unsigned integer."
+  [str]
+  (if (re-matches #"\d+" str)
+    true false))
+
+(defn parse-unsigned-int
+  "Return an integer if the argument is an integer."
+  [str-or-int]
+  (cond
+    (int? str-or-int)
+    str-or-int
+
+    (unsigned-int? str-or-int)
+    (Integer/parseInt str-or-int)
+
+    :else
+    nil))
+

src/cipher_analytical_machine/parsers/simple_substitution.clj

@@ -0,0 +1,54 @@
+(ns cipher-analytical-machine.parsers.simple-substitution
+  (:require
+   [cipher-analytical-machine.ciphers.simple-substitution :as ss]
+   [cipher-analytical-machine.parsers.parsers :as ps]
+   [clojure.set :as set]
+   [cheshire.core :as cc])
+  (:gen-class))
+
+(defn encode-key-and-substitution-table-to-json
+  [key substitution-table]
+  (-> {"key" key}
+      (assoc "table" substitution-table)
+      (cc/generate-string)))
+
+(defn decode-key
+  "Returns the first character if the string is a char. Return the number if the string is a number."
+  [str]
+  (if (ps/unsigned-int? str)
+    (Integer/parseInt str)
+    (first str)))
+
+(defn decode-pair
+  "Decode a numbers as a string and a char as a string"
+  [acc [key value]]
+  (if (ps/unsigned-int? key)
+    (assoc acc (decode-key key) (decode-key value))
+    (assoc acc (decode-key key) value)))
+
+(defn decode-substitution-table
+  [substitution-table-map-from-json]
+  (reduce decode-pair {} substitution-table-map-from-json))
+
+(defn decode-key-and-substitution-table-from-json
+  [json]
+  (let [data (cc/parse-string json)]
+    (assoc data "table" (decode-substitution-table (get data "table")))))
+
+(defn generate-table-or-decode-json
+  "It generate the table and return map with the key and the table if the argument is a key. Else it decode the json."
+  [key-or-json symbols]
+  (if (ps/unsigned-int? key-or-json)
+    (-> {"key" key-or-json}
+        (assoc "table" (ss/generate-substitution-table symbols)))
+    (decode-key-and-substitution-table-from-json key-or-json)))
+
+(defn invert-table-in-map
+  "Invert the table in a decoded json (key, table)"
+  [decoded-json]
+  (->>
+   (-> decoded-json
+       (get "table")
+       (set/map-invert))
+   (assoc decoded-json "table")))
+

src/cipher_analytical_machine/symbol_factories.clj

@@ -1,34 +0,0 @@
-(ns cipher-analytical-machine.symbol_factories
-  (:require [clojure.string :as cs])
-  (:gen-class))
-
-(defn lower-english-alphabet-factory
-  "Return the English alphabet with only lowercase letters"
-  []
-  (reduce
-   (fn [acc val] (str acc (char val)))
-   ""
-   (range (int \a) (inc (int \z)))))
-
-(defn english-alphabet-factory
-  "Return the English alphabet with lower and upper case letters"
-  []
-  (let [letters (lower-english-alphabet-factory)]
-    (str letters (cs/upper-case letters))))
-
-(defn lower-ukrainian-alphabet-factory
-  "Return the Ukrainian alphabet with only lowercase letters"
-  []
-  "абвгґдеєжзиіїйклмнопрстуфхцчшщьюя")
-
-(defn ukrainian-alphabet-factory
-  "Return the Ukrainian alphabet with lower and upper case letters"
-  []
-  (let [letters (lower-ukrainian-alphabet-factory)]
-    (str letters (cs/upper-case letters))))
-
-(defn digit-set-factory
-  "Return digits"
-  []
-  "0123456789")
-

src/cipher_analytical_machine/symbols/factories.clj

@@ -0,0 +1,47 @@
+(ns cipher-analytical-machine.symbols.factories
+  (:require [clojure.string :as cs])
+  (:gen-class))
+
+(defn english-alphabet-factory
+  "Return the English alphabet with only lowercase letters"
+  []
+  (reduce
+   (fn [acc val] (str acc (char val)))
+   ""
+   (range (int \a) (inc (int \z)))))
+
+(defn ukrainian-alphabet-factory
+  "Return the Ukrainian alphabet with only lowercase letters"
+  []
+  "абвгґдеєжзиіїйклмнопрстуфхцчшщьюя")
+
+(defn digit-set-factory
+  "Return digits"
+  []
+  "0123456789")
+
+(defn punctuation-symbol-factory
+  "Return punctuation symbols"
+  []
+  ".,:;-!?")
+
+(defn space-symbol-factory
+  "Return punctuation symbols"
+  []
+  " \t\n")
+
+(defn default-symbol-factory
+  "Return a default string of symbols for a language"
+  [language-code]
+  (cond
+    (= language-code "en")
+    (str (english-alphabet-factory)
+         \ )
+
+    (= language-code "uk")
+    (str (ukrainian-alphabet-factory)
+         \ )
+
+    :else
+    (default-symbol-factory "en")))
+

src/cipher_analytical_machine/symbols/frequencies.clj

@@ -1,7 +1,17 @@
-(ns cipher-analytical-machine.symbol_frequences
+(ns cipher-analytical-machine.symbols.frequencies
   (:gen-class))
 
-(def english-letter-frequences {
+(defn map-to-string
+  "Convert the map of frequencies to the frequency string. Letters are sorted by frequency in descending order."
+  [frequency-map]
+  (->> frequency-map
+       (reduce (fn [acc el] (conj acc el)) [])
+       (sort-by last)
+       (map first)
+       (reverse)
+       (apply str)))
+
+(def english-letter-frequencies {
    \a 0.0804
    \b 0.0154
    \c 0.0306
@@ -30,7 +40,7 @@
    \z 0.0009
 })
 
-(def ukrainian-letter-frequences {
+(def ukrainian-letter-frequencies {
    \а 0.064
    \б 0.013
    \в 0.046

src/main/java/cipher_analytical_machine/analyzers/caesar/FrequencyAnalyzer.java

@@ -0,0 +1,53 @@
+package cipher_analytical_machine.analyzers.caesar;
+
+import cipher_analytical_machine.analyzers.caesar.IsNonsense;
+import cipher_analytical_machine.ciphers.caesar.Decrypted;
+
+import java.util.HashMap;
+import java.util.Map;
+import java.util.Map.Entry;
+
+public class FrequencyAnalyzer {
+    private String ciphertext;
+    private String symbols;
+    private String symbol_frequences;
+    private Decrypted decryptor;
+    private IsNonsense isNonsense;
+
+    public FrequencyAnalyzer(String ciphertext, String symbols, String symbol_frequences, Decrypted decryptor, IsNonsense isNonsense) {
+	    this.ciphertext = ciphertext;
+        this.symbol_frequences = symbol_frequences;
+        this.symbols = symbols;
+	    this.decryptor = decryptor;
+	    this.isNonsense = isNonsense;
+    }
+
+    public String crack() {
+        // Знаходимо кількість літер
+        Map<Character, Integer> encryptedLetterCounts = new HashMap<>();
+
+        for (char c : ciphertext.toLowerCase().toCharArray()) {
+            encryptedLetterCounts.put(c, encryptedLetterCounts.getOrDefault(c, 0) + 1);
+        }
+
+        // Знаходимо букву, яка зустрічається найчастіше
+        char mostFrequentEncryptedLetter = ' ';
+        int mostFrequentEncryptedLetterCount = 0;
+
+        for (Entry<Character, Integer> entry : encryptedLetterCounts.entrySet()) {
+            if (entry.getValue() > mostFrequentEncryptedLetterCount) {
+                mostFrequentEncryptedLetter = entry.getKey();
+                mostFrequentEncryptedLetterCount = entry.getValue();
+            }
+        }
+
+        // Обчислимо зміщення
+        int size = symbols.length();
+        int indexOfMostFrequentEncryptedLetter = symbols.indexOf(mostFrequentEncryptedLetter);
+        int indexOfMostFrequentLetter = symbols.indexOf(symbol_frequences.charAt(0));
+        int shift = (indexOfMostFrequentEncryptedLetter - indexOfMostFrequentLetter) % size;
+
+        return decryptor.decrypt(ciphertext, shift, symbols);
+    }
+}
+

src/main/java/cipher_analytical_machine/analyzers/caesar/IsNonsense.java

@@ -0,0 +1,6 @@
+package cipher_analytical_machine.analyzers.caesar;
+
+public interface IsNonsense {
+    boolean isNonsense(String message);
+}
+

src/main/java/cipher_analytical_machine/ciphers/caesar/Decrypted.java

@@ -0,0 +1,6 @@
+package cipher_analytical_machine.ciphers.caesar;
+
+public interface Decrypted {
+    String decrypt(String message, int key, String symbols);
+}
+

test/cipher_analytical_machine/analyzers/analyzers_test.clj

@@ -0,0 +1,40 @@
+(ns cipher-analytical-machine.analyzers.analyzers-test
+  (:require
+   [clojure.test :refer :all]
+   [cipher-analytical-machine.analyzers.analyzers :refer :all]))
+
+(deftest count-characters-test
+  (testing "Count two dublicates and one uniq character from a string."
+    (is (= {\a 2 \b 1}
+           (count-characters "aba")))))
+
+(deftest chi-squared-letter-statistic-test
+  (testing "If the frequence of A is 0.1, the text length is 100 and contains 20 times, then the chi-squared is 10."
+    (is (= 10.0
+           (chi-squared-letter-statistic 20 0.1 100))))
+
+  (testing "If the frequence of A is 0.1, the text length is 10 and contains 5 times, then the chi-squared is 16.0."
+    (is (= 16.0
+           (chi-squared-letter-statistic 5 0.1 10)))))
+
+(deftest chi-squared-statistic-test
+  (let [text "aaaaabbbbb"]
+  (testing "If the frequencies of a and b is 0.1, the text length is 10 and contains them 5 times, then score is 32."
+    (is (= 32.0
+           (chi-squared-statistic text {\a 0.1 \b 0.1}))))))
+
+(deftest sort-map-by-count-test
+  (testing "Test the sort in descending order."
+    (is (= [[\b 3] [\a 2] [\c 1]]
+           (sort-map-by-count {\a 2 \b 3 \c 1} )))))
+
+(deftest table-to-string-test
+  (testing "Test the sort in descending order."
+    (is (= "bac"
+           (table-to-string [[\b 3] [\a 2] [\c 1]])))))
+
+(deftest symbol-frequency-table-test
+  (testing "Test the sort in descending order."
+    (is (= {\d \b, \e \a, \f \c}
+           (symbol-frequency-table {\d 3 \e 2 \f 1} {\b 3 \a 2 \c 1})))))
+

test/cipher_analytical_machine/analyzers/caesar_test.clj

@@ -0,0 +1,76 @@
+(ns cipher-analytical-machine.analyzers.caesar-test
+  (:require
+   [clojure.test :refer :all]
+   [cipher-analytical-machine.analyzers.caesar :refer :all]
+   [cipher-analytical-machine.symbols.frequencies :as sf]
+   [cipher-analytical-machine.analyzers.analyzers :as ca]
+   [clojure.string :as cs]))
+
+(deftest get-all-texts-test
+  (testing "There're three text when the text is 'abc' and the set of symbol is 'abc'."
+    (is (= 3 (count (get-all-texts "abc" "abc")))))
+
+  (testing "A pair must have an integer and a string."
+    (let [pairs (get-all-texts "abc" "abc")
+          pair (first pairs)]
+      (is (and (int? (first pair))
+               (string? (last pair))))))
+
+  (testing "There're 27 combinations for a 'Hello World'."
+    (let [ciphertext "khoorczruog"
+        symbols "abcdefghijklmnopqrstuvwxyz "]
+      (is (= 27 (count (get-all-texts ciphertext symbols)))))))
+
+(deftest get-all-scores-test
+  (testing "There're 27 combinations for a 'Hello World'."
+    (let [ciphertext "khoorczruog"
+          symbols "abcdefghijklmnopqrstuvwxyz "
+          frequencies sf/english-letter-frequencies
+          text-pairs (get-all-texts ciphertext symbols)]
+      (is (= 27 (count (get-all-scores frequencies text-pairs)))))))
+
+(deftest get-min-score-pair-test
+  (testing "If a key is one, then the min score pair is 15."
+    (let [scores (list [0 20.0] [1 15.0] [2 30.0])
+          min-score-pair (get-min-score-pair scores)]
+      (is (= [1 15.0] min-score-pair)))))
+
+(deftest get-key-test
+  (let [plaintext "hello world"
+        ciphertext "khoorczruog"
+        key 3
+        symbols "abcdefghijklmnopqrstuvwxyz "
+        frequencies sf/english-letter-frequencies]
+    (testing "The plaintext is encrypted with 3 as the key."
+      (is (= key (get-key ciphertext symbols frequencies)))))
+
+  (let [; З поеми "Кавказ" Тараса Григоровича Шевченка:
+        plaintext "Борітеся – поборете, Вам Бог помагає! За вас правда, за вас слава. І воля святая!"
+        ciphertext "жхчощйшде–ецхжхчйщй,езєуежхиецхуєиєк!емєезєшецчєзїє,емєезєшештєзє.еоезхтдешздщєд!"
+        key 7
+        symbols "абвгґдеєжзиіїйклмнопрстуфхцчшщьюя "
+        frequencies sf/ukrainian-letter-frequencies]
+    (testing "The plaintext is encrypted with 3 as the key."
+      (is (= key (get-key ciphertext symbols frequencies))))))
+
+(deftest get-plaintext-test
+  (let [plaintext "hello world"
+        ciphertext "khoorczruog"
+        symbols "abcdefghijklmnopqrstuvwxyz "
+        frequencies sf/english-letter-frequencies]
+    (testing "The plaintext is encrypted with 3 as the key."
+      (is (= plaintext (get-plaintext ciphertext symbols frequencies))))
+
+    (testing "The ciphertext is case-insensitive."
+      (is (= plaintext (get-plaintext "KhoorcZruog" symbols frequencies)))))
+
+  (let [; З поеми "Кавказ" Тараса Григоровича Шевченка:
+        plaintext "Борітеся – поборете, Вам Бог помагає! За вас правда, за вас слава. І воля святая!"
+        ciphertext "жхчощйшде–ецхжхчйщй,езєуежхиецхуєиєк!емєезєшецчєзїє,емєезєшештєзє.еоезхтдешздщєд!"
+        key 7
+        symbols "абвгґдеєжзиіїйклмнопрстуфхцчшщьюя "
+        frequencies sf/ukrainian-letter-frequencies]
+    (testing "The ciphertext is case-insensitive."
+      (is (= (cs/lower-case plaintext)
+             (get-plaintext ciphertext symbols frequencies))))))
+

test/cipher_analytical_machine/analyzers/language_test.clj

@@ -1,7 +1,7 @@
-(ns cipher-analytical-machine.language_analyzer_test
+(ns cipher-analytical-machine.analyzers.language-test
   (:require
    [clojure.test :refer :all]
-   [cipher-analytical-machine.language_analyzer :refer :all]
+   [cipher-analytical-machine.analyzers.language :refer :all]
   ))
 
 (deftest detect-language-test
@@ -41,5 +41,5 @@
     (is (is-nonsense? "dfgjldfjgdfl gjdfg idfjig hdgesr khs e." "en")))
 
   (testing "Checking a gibberish that uses Ukrainian letters"
-    (is (is-nonsense? "іаврпшшцді врадів аргів аріл варї йцґ." "uk"))))
+    (is (is-nonsense? "іаврпшшцді івафі лоінїмч йцувіа івапґ." "uk"))))
 

test/cipher_analytical_machine/ciphers/caesar_test.clj

@@ -1,7 +1,7 @@
-(ns cipher-analytical-machine.caesar-test
+(ns cipher-analytical-machine.ciphers.caesar-test
   (:require
    [clojure.test :refer :all]
-   [cipher-analytical-machine.caesar :refer :all]
+   [cipher-analytical-machine.ciphers.caesar :refer :all]
   ))
 
 (deftest calculate-char-index-test
@@ -51,14 +51,20 @@
     (testing "The message 'abc' is encrypted to 'bca'"
       (is (= "bca" (encrypt-message "abc" 1 symbols))))
 
+    (testing "The message 'ABC' is encrypted to 'bca', because of case-insensitive."
+      (is (= "bca" (encrypt-message "ABC" 1 symbols))))
+
     (testing "The message 'bca' is decrypted to 'abc'"
       (is (= "abc" (encrypt-message "bca" -1 symbols))))))
 
 (deftest decrypt-message-text
   (let [symbols "abc"]
     (testing "The message 'bca' is decrypted to 'abc'"
-      (is (= "abc" (decrypt-message "bca" 1 symbols)))
+      (is (= "abc" (decrypt-message "bca" 1 symbols))))
+
+    (testing "The message 'BCA' is decrypted to 'abc', because of case-insensitive."
+      (is (= "abc" (decrypt-message "BCA" 1 symbols))))
 
     (testing "The message 'abc' is encrypted to 'bca'"
-      (is (= "bca" (decrypt-message "abc" -1 symbols)))))))
+      (is (= "bca" (decrypt-message "abc" -1 symbols))))))
 

test/cipher_analytical_machine/ciphers/gamma_test.clj

@@ -0,0 +1,62 @@
+(ns cipher-analytical-machine.ciphers.gamma-test
+  (:require
+   [clojure.test :refer :all]
+   [cipher-analytical-machine.ciphers.gamma :refer :all]))
+
+(deftest add-mod-test
+  (testing "The remainder must be as expected."
+    (are [a b module expected]
+        (= expected (add-mod a b module))
+      5 2 4 3
+      1 2 3 0
+      2 2 3 1)))
+
+(deftest generate-seq-test
+  (testing "Checking that the next element of a sequence is calculated by (e[i-1] + e[i-3] % mod)."
+    (are [a b c module size expected]
+        (= expected (take size (generate-seq a b c module)))
+      4 32 15 33 10 [4 32 15 19 18 0 19 4 4 23]
+      1 2  3  3  9  [1 2 3 1 0 0 1 1 1])))
+
+(deftest generate-gamma-seq-test
+  (testing "Checking that the next element of a sequence is calculated by (s[i] + s[i+1] % mod)."
+    (are [acc seq module expected]
+        (= expected (generate-gamma-seq acc seq module))
+      [] [4 32 15 19 18 0 19 4 4 23] 33 [3 14 1 4 18 19 23 8 27]
+      [] [1 2 3 1 0 0 1 1 1]         3  [0 2 1 1 0 1 2 2])))
+
+(deftest generate-gamma-test
+  (testing "Checking that the gamma is generated as expected."
+    (are [a b c module size expected]
+        (= expected (generate-gamma a b c module size))
+      4 32 15 33 10 [3 14 1 4 18 19 23 8 27 17]
+      1 2  3  3  9  [0 2 1 1 0 1 2 2 0])))
+
+(deftest encrypt-array-test
+  (testing "Checking that the message is encrypted as expected: (msg+gamma)%module."
+    (are [key module array expected]
+        (= expected (encrypt-array key module array))
+      [4 32 15] 33 [3 14 1 4 18 19 23 8 27 17] [6 28 2 8 3 5 13 16 21 1]
+      [1 2  3 ] 3  [0 2 1 1 0 1 2 2 0]         [0 1 2 2 0 2 1 1 0])))
+
+(deftest encrypt-message-test
+  (testing "Checking that the message is encrypted as expected"
+    (are [key symbols message expected]
+        (= expected (encrypt-message key symbols message))
+      [4 32 15] "абвгґдеєжзиіїйклмнопрстуфхцчшщьюя" "гкбґопужчн" "ешвжгдймсб"
+      [1 2  3 ] "абв"  "авббабвва"  "абввавбба")))
+
+(deftest decrypt-array-test
+  (testing "Checking that the message is decrypted as expected."
+    (are [key module array expected]
+        (= expected (decrypt-array key module array))
+      [4 32 15] 33 [6 28 2 8 3 5 13 16 21 1] [3 14 1 4 18 19 23 8 27 17]
+      [1 2  3 ] 3  [0 1 2 2 0 2 1 1 0]       [0 2 1 1 0 1 2 2 0])))
+
+(deftest decrypt-message-test
+  (testing "Checking that the message is decrypted as expected"
+    (are [key symbols message expected]
+        (= expected (decrypt-message key symbols message))
+      [4 32 15] "абвгґдеєжзиіїйклмнопрстуфхцчшщьюя" "ешвжгдймсб" "гкбґопужчн"
+      [1 2  3 ] "абв" "абввавбба" "авббабвва")))
+

test/cipher_analytical_machine/ciphers/simple_substitution_test.clj

@@ -0,0 +1,85 @@
+(ns cipher-analytical-machine.ciphers.simple-substitution-test
+  (:require
+   [clojure.test :refer :all]
+   [cipher-analytical-machine.ciphers.simple-substitution :refer :all]))
+
+(deftest find-value-in-table-test
+  (let [table {\a 1 \b 2 \c 3}
+        rtable {1 \a 2 \b 3 \c}]
+    (testing "If the symbol is in the table as a key, then the result won't nil."
+      (are [key expected]
+          (= expected (find-value-in-table key table))
+        \a 1
+        \d nil
+        1 nil
+        5 nil))
+
+    (testing "If the digit is in the reversed table as a key, then the result won't nil."
+      (are [key expected]
+          (= expected (find-value-in-table key rtable))
+        \a nil
+        \d nil
+        1 \a
+        5 nil))))
+
+(deftest generate-sorted-substitution-table-test
+  (testing "If the symbol is in the table as a key, then the result won't nil."
+    (are [symbols expected-table]
+        (= expected-table (generate-sorted-substitution-table symbols))
+      "abc" {0 \a 1 \b 2 \c}
+      "a" {0 \a})))
+
+(deftest encrypt-message-test
+  (let [symbols "abc"
+        table {\a 1 \b 2 \c 3}]
+    (testing "The function must encrypt the message and remove unknown symbols."
+      (are [message expected]
+          (= expected (encrypt-message message table))
+        "abc" "1,2,3"
+        "aDbdc" "1,2,3"))))
+
+(deftest encrypt-message-with-caesar-test
+  (let [symbols "abc"
+        table {\a 1 \b 2 \c 3}]
+    (testing "The function must encrypt the message and remove unknown symbols."
+      (are [message key expected]
+          (= expected (encrypt-message-with-caesar message key table symbols))
+        "abc" 0 "1,2,3"
+        "abc" 1 "2,3,1"
+        "aDbdc" 0 "1,2,3"))))
+
+(deftest decrypt-by-table-test
+  (let [table {\d \a \e \b \f \c}]
+    (testing "The function must decrypt the message by the table."
+      (are [message expected]
+          (= expected (decrypt-by-table table message))
+        "def" '(\a \b \c)
+        "abf" '(nil nil \c)
+        "fed" '(\c \b \a)))))
+
+(deftest decrypt-message-by-symbol-table-test
+  (let [table {\d \a \e \b \f \c}]
+    (testing "The function must decrypt the message and remove unknown numbers."
+      (are [message expected]
+          (= expected (decrypt-message-by-symbol-table table message))
+        "def" "abc"
+        "daef" "abc"))))
+
+(deftest decrypt-message-test
+  (let [table {1 \a 2 \b 3 \c}]
+    (testing "The function must decrypt the message and remove unknown numbers."
+      (are [message expected]
+          (= expected (decrypt-message message table))
+        "1,2,3" "abc"
+        "1,12,2,3" "abc"))))
+
+(deftest decrypt-message-with-caesar-test
+  (let [symbols "abc"
+        table {1 \a 2 \b 3 \c}]
+    (testing "The function must decrypt the message and remove unknown numbers."
+      (are [message key expected]
+          (= expected (decrypt-message-with-caesar message key table symbols))
+        "1,2,3" 0 "abc"
+        "2,3,1" 1 "abc"
+        "1,12,2,3" 0 "abc"))))
+

test/cipher_analytical_machine/parsers/parsers_test.clj

@@ -0,0 +1,25 @@
+(ns cipher-analytical-machine.parsers.parsers-test
+  (:require
+   [clojure.test :refer :all]
+   [cipher-analytical-machine.parsers.parsers :refer :all]))
+
+(deftest unsigned-int?-test
+  (testing "The function return true only for an unsingned integer as a string."
+    (are [str expected]
+        (= expected
+           (unsigned-int? str))
+      "9" true
+      "10" true
+      "-10" false
+      "abc" false)))
+
+(deftest parse-unsigned-int-test
+  (testing "The function parse the integer if the string is an integer."
+    (are [str-or-int expected]
+        (= expected
+           (parse-unsigned-int str-or-int))
+      "9"   9
+      9     9
+      "10"  10
+      "-10" nil
+      "abc" nil)))

test/cipher_analytical_machine/parsers/simple_substitution_test.clj

@@ -0,0 +1,49 @@
+(ns cipher-analytical-machine.parsers.simple-substitution-test
+  (:require
+   [clojure.test :refer :all]
+   [cipher-analytical-machine.parsers.simple-substitution :refer :all]))
+
+(deftest encode-key-and-substitution-table-to-json-test
+  (testing "The encoder must parse the map and create a json."
+    (are [key table expected-json]
+        (= expected-json
+           (encode-key-and-substitution-table-to-json key table))
+      1 {0 \a 1 \b 2 \c} "{\"key\":1,\"table\":{\"0\":\"a\",\"1\":\"b\",\"2\":\"c\"}}"
+      2 {\a 0 \b 1 \c 2} "{\"key\":2,\"table\":{\"a\":0,\"b\":1,\"c\":2}}")))
+
+(deftest decode-key-and-substitution-table-from-json-test
+  (testing "The decoder must parse the json and create a map."
+    (are [json expected-data]
+        (= expected-data
+           (decode-key-and-substitution-table-from-json json))
+      "{\"key\":1, \"table\":{\"0\":\"a\",\"1\":\"b\",\"2\":\"c\"}}" {"key" 1 "table" {0 \a 1 \b 2 \c}}
+      "{\"key\":2, \"table\":{\"a\":0,\"b\":1,\"c\":2}}" {"key" 2 "table" {\a 0 \b 1 \c 2}})))
+
+(deftest generate-table-or-decode-json-test
+  (let [symbols "abc"]
+    (testing "The function decodes the json."
+      (are [json expected-data]
+          (= expected-data
+             (generate-table-or-decode-json json symbols))
+        "{\"key\":1, \"table\":{\"0\":\"a\",\"1\":\"b\",\"2\":\"c\"}}" {"key" 1 "table" {0 \a 1 \b 2 \c}}
+        "{\"key\":2, \"table\":{\"a\":0,\"b\":1,\"c\":2}}" {"key" 2 "table" {\a 0 \b 1 \c 2}}))
+
+    (testing "The function generates the table, because the argument is a key."
+      (are [json expected-data]
+          (let [data (generate-table-or-decode-json json symbols)]
+            (and (= (get expected-data "key")
+                    (get data "key"))
+                 (= (keys (get expected-data "table"))
+                    (keys (get data "table"))))
+             (generate-table-or-decode-json json symbols))
+        "1" {"key" 1 "table" {0 \a 1 \b 2 \c}}
+        "2" {"key" 2 "table" {\a 0 \b 1 \c 2}}))))
+
+(deftest invert-table-in-map-test
+  (testing "The function invert the table in a decoded json."
+    (are [decoded-json expected-data]
+        (= expected-data
+           (invert-table-in-map decoded-json))
+      {"key" 1 "table" {0 \a 1 \b 2 \c}} {"key" 1 "table" {\a 0 \b 1 \c 2}}
+      {"key" 2 "table" {\a 0 \b 1 \c 2}} {"key" 2 "table" {0 \a 1 \b 2 \c}})))
+

test/cipher_analytical_machine/symbol_factories_test.clj

@@ -1,46 +0,0 @@
-(ns cipher-analytical-machine.symbol-factories-test
-  (:require
-   [clojure.test :refer :all]
-   [cipher-analytical-machine.symbol_factories :refer :all]
-  ))
-
-(deftest lower-english-alphabet-factory-test
-  (let [symbols (lower-english-alphabet-factory)]
-    (testing "It must have same order"
-      (is (= "abcdefghijklmnopqrstuvwxyz" symbols)))
-
-    (testing "It must have 26 letters"
-      (is (= 26 (count symbols))))))
-
-(deftest english-alphabet-factory-test
-  (let [symbols (english-alphabet-factory)]
-    (testing "It must have same order"
-      (is (= "abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ" symbols)))
-
-    (testing "It must have 2*26 letters"
-      (is (= (* 2 26) (count symbols))))))
-
-(deftest lower-ukrainian-alphabet-factory-test
-  (let [symbols (lower-ukrainian-alphabet-factory)]
-    (testing "It must have same order"
-      (is (= "абвгґдеєжзиіїйклмнопрстуфхцчшщьюя" symbols)))
-
-    (testing "It must have 33 letters"
-      (is (= 33 (count symbols))))))
-
-(deftest ukrainian-alphabet-factory-test
-  (let [symbols (ukrainian-alphabet-factory)]
-    (testing "It must have same order"
-      (is (= "абвгґдеєжзиіїйклмнопрстуфхцчшщьюяАБВГҐДЕЄЖЗИІЇЙКЛМНОПРСТУФХЦЧШЩЬЮЯ" symbols)))
-
-    (testing "It must have 2*33 letters"
-      (is (= (* 2 33) (count symbols))))))
-
-(deftest digit-set-factory-test
-  (let [symbols (digit-set-factory)]
-    (testing "It must have same order"
-      (is (= "0123456789" symbols)))
-
-    (testing "It must have 10 digits"
-      (is (= 10 (count symbols))))))
-

test/cipher_analytical_machine/symbols/factories_test.clj

@@ -0,0 +1,59 @@
+(ns cipher-analytical-machine.symbols.factories-test
+  (:require
+   [clojure.test :refer :all]
+   [cipher-analytical-machine.symbols.factories :refer :all]
+  ))
+
+(deftest english-alphabet-factory-test
+  (let [symbols (english-alphabet-factory)]
+    (testing "It must have the same order."
+      (is (= "abcdefghijklmnopqrstuvwxyz" symbols)))
+
+    (testing "It must have 26 letters."
+      (is (= 26 (count symbols))))))
+
+(deftest ukrainian-alphabet-factory-test
+  (let [symbols (ukrainian-alphabet-factory)]
+    (testing "It must have the same order."
+      (is (= "абвгґдеєжзиіїйклмнопрстуфхцчшщьюя" symbols)))
+
+    (testing "It must have 33 letters."
+      (is (= 33 (count symbols))))))
+
+(deftest digit-set-factory-test
+  (let [symbols (digit-set-factory)]
+    (testing "It must have the same order."
+      (is (= "0123456789" symbols)))
+
+    (testing "It must have 10 digits."
+      (is (= 10 (count symbols))))))
+
+(deftest punctuation-symbol-factory-test
+  (let [symbols (punctuation-symbol-factory)]
+    (testing "It must have the same order."
+      (is (= ".,:;-!?" symbols)))
+
+    (testing "It must have 7 symbols."
+      (is (= 7 (count symbols))))))
+
+(deftest space-symbol-factory-test
+  (let [symbols (space-symbol-factory)]
+    (testing "It must have the same order."
+      (is (= " \t\n" symbols)))
+
+    (testing "It must have 3 symbols."
+      (is (= 3 (count symbols))))))
+
+(deftest default-symbol-factory-test
+  (testing "If language code is 'en', then it must have 27 symbols."
+    (let [symbols (default-symbol-factory "en")]
+      (is (= 27 (count symbols)))))
+
+  (testing "If language code is 'uk', then it must have 34 symbols."
+    (let [symbols (default-symbol-factory "uk")]
+      (is (= 34 (count symbols)))))
+
+  (testing "If language code is unidentified, then it must have the 'en'."
+    (let [symbols (default-symbol-factory "Maybe a code")]
+      (is (= 27 (count symbols))))))
+

test/cipher_analytical_machine/symbols/frequencies_test.clj

@@ -0,0 +1,11 @@
+(ns cipher-analytical-machine.symbols.frequencies-test
+  (:require
+   [clojure.test :refer :all]
+   [cipher-analytical-machine.symbols.frequencies :refer :all]))
+
+(deftest calculate-char-index-test
+  (let [symbol-map english-letter-frequencies]
+    (testing "The map must be converted to 'etaoinsrhldcumfpgwybvkxjqz'"
+      (is (= "etaoinsrhldcumfpgwybvkxjqz"
+             (map-to-string symbol-map))))))
+